PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 331aa    MW: 36629.3 Da    PI: 7.6014
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.11.4e-691022672154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........kskkqsal 86 
                     r+g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a s++++++kr re           +s ++ ++
  XP_009104702.1 102 RQGSMNCQDCGNQAKKDCSHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHRSAFSRETQKAKRLREAngggdnvdkdHSGSAGSA 196
                     7899***********************************************************99999999999988899999887667777888 PP

          DUF702  87 sstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                      +t++++a+s++ +e+s+ lP+evss+avfrcvrv+s+++  +++e+aYqtav+igGh+fkGiLydqG+e+
  XP_009104702.1 197 IATRVANANSNSGFEVSQnLPPEVSSPAVFRCVRVNSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPEQ 267
                     999**********998877*******************88535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.9E-63105266IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.5E-28107149IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-25216265IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAGFFYLGGR DNNKQDLHQV DKSSYLYLYK DEIYNTNKGF EIWPPQYFQE QHQQHVTAPA  60
NFYSFGMVPS GSSSNNNNNN RSRSLHFNVV SDHEPGGFTV TRQGSMNCQD CGNQAKKDCS  120
HMRCRTCCKS RGFHCQTHVK STWVPAAKRR ERLAQLASLQ HRSAFSRETQ KAKRLREANG  180
GGDNVDKDHS GSAGSAIATR VANANSNSGF EVSQNLPPEV SSPAVFRCVR VNSIEEDEDD  240
QEYAYQTAVN IGGHIFKGIL YDQGPEQDHH HQLNLLAPTA TTTNAEETAA KTAVTVAGNN  300
NTGLILDPSS LYPVQLSSYI SGTPFFTPPR S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104702.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLM4CHR60.0M4CHR6_BRARP; Uncharacterized protein
STRINGBra003749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-169SHI-related sequence 5